| Both sides previous revisionPrevious revisionNext revision | Previous revision |
| protected:publication [2014/01/06 08:36] – dirty | protected:publication [2015/11/21 22:46] (current) – [Conference paper] dirty |
|---|
| ====== Journal paper ====== | ====== Journal paper ====== |
| - Tzu-Wen Lin, Jian-Wei Wu and **__Darby Tien-Hao Chang__***, “[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0075940|Combining Phylogenetic Profiling-Based and Machine Learning-Based Techniques to Predict Functional Related Proteins]],” //PLOS ONE//, **8**, e75940, 2013. (__SCI__) (NSC 102-2221-E-006-085-MY2) | - Che-Wei Chang, Wen-Bin Lee, An Chen-Deng, Tsunglin Liu, Joseph T. Tseng and **__Darby Tien-Hao Chang__***, "Light-RCV: a lightweight read coverage viewer for next generation sequencing data", accepted by //BMC Genomics//. (__SCI__) (MOST 104-2628-E-006-004-MY3) |
| | - Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh and **__Darby Tien-Hao Chang__***, "[[http://www.biomedcentral.com/1752-0509/8/S5/S9|A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae]]", //BMC Systems Biology//, **8**(Suppl 5):S9, 2014. (__SCI__) (NSC 102-2221-E-006-085-MY2) |
| | - Hao Wang, Wen-Hao Chiang, Chia-Wei Chou and **__Darby Tien-Hao Chang__***, "[[http://www.thesij.com/CSEA-2014-May.php|Integrating Phosphorylation and Catalytic Sites Information into AH-DB]]", //The SIJ Transactions on Computer Science Engineering & its Applications//, **2**(3), 77-81, 2014. (NSC 102-2221-E-006-085-MY2) |
| | - Tzu-Wen Lin, Jian-Wei Wu and **__Darby Tien-Hao Chang__***, "[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0075940|Combining Phylogenetic Profiling-Based and Machine Learning-Based Techniques to Predict Functional Related Proteins]]," //PLOS ONE//, **8**, e75940, 2013. (__SCI__) (NSC 102-2221-E-006-085-MY2) |
| - Chen-Yu Fan, Yi-Han Bai, Cheng-Yi Huang, Tsung-Ju Yao and **__Darby Tien-Hao Chang__***, “[[http://www.sciencedirect.com/science/article/pii/S0378111912015569|PRASA: an integrated web server that analyzes protein interaction types]],” //Gene//, **518**(1), 78-83, 2013. (__SCI__) (NSC 101-2221-E-006-264-) | - Chen-Yu Fan, Yi-Han Bai, Cheng-Yi Huang, Tsung-Ju Yao and **__Darby Tien-Hao Chang__***, “[[http://www.sciencedirect.com/science/article/pii/S0378111912015569|PRASA: an integrated web server that analyzes protein interaction types]],” //Gene//, **518**(1), 78-83, 2013. (__SCI__) (NSC 101-2221-E-006-264-) |
| * PRASA is available at http://prasa.ee.ncku.edu.tw/ and http://service.csbb.ntu.edu.tw/prasa/. | * PRASA is available at http://prasa.ee.ncku.edu.tw/ and http://service.csbb.ntu.edu.tw/prasa/. |
| |
| ====== Conference paper ====== | ====== Conference paper ====== |
| - Tzu-Wen Lin and **__Darby Tien-Hao Chang__**, "Combining Phylogenetic Profiling-based and Machine Learning-based Techniques to Predict Functional Related Proteins," in proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013 ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) | - Che-Wei Chang, Wen-Bin Lee, An Chen-Deng, Tsunglin Liu, Joseph T. Tseng and **__Darby Tien-Hao Chang__**, "Light-RCV: a lightweight read coverage viewer for next generation sequencing data", in proceedings of the GIW/InCoB 2015, Tokyo, Japan, September 9-11, 2015. ([[http://www.jsbi.org/giw-incob2015/|GIW/InCoB 2015]]) |
| - Jhih-Jheng Zeng and **__Darby Tien-Hao Chang__**, "A mobile game for biomedical literature mining," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013 ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) | - Chia-Pin Kang, Hung-Chi Tu, Tzu-Fun Fu and **__Darby Tien-Hao Chang__**, "An Automatic Method to Calculate Heartbeat from Zebrafish Embryo Videos ", in poster proceedings of the GIW/InCoB 2015, Tokyo, Japan, September 9-11, 2015. ([[http://www.jsbi.org/giw-incob2015/|GIW/InCoB 2015]]) |
| - Shao-Ting Jang and **__Darby Tien-Hao Chang__**, "A systematic analysis on regulatory characteristics of genes with protein-protein interactions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013 ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) | - Wei-Sheng Wu, Ming-Liang Wei, Chia-Ming Yeh and **__Darby Tien-Hao Chang__**, "[[http://www.biomedcentral.com/1752-0509/8/S5/S9|A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae]]", in proceedings of the 25th International Conference on Genome Informatics, Tokyo, Japan, December 15-17, 2014. ([[http://www.jsbi.org/giw2014/|GIW / ISCB-Asia 2014]]) |
| - **__Darby Tien-Hao Chang__**, Wen-Hao Chiang and Chia-Wei Chou, "Identifying structure variation profiles corresponding to biological processes and functions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013 ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) | - **__Darby Tien-Hao Chang__**, Guan-Yu Shiu and Yu-Chieh Sun, "Predicting Cis-Regulatory Modules by Method Integration," in proceedings of the 11th IEEE International Conference on Control & Automation, Taichung, Taiwan, June 18-20, 2014. ([[http://ieee-icca.org/|ICCA 2014]]) |
| - **__Darby Tien-Hao Chang__**, Wen-Hao Chiang and Hao Wang, "An enhanced repository of protein structure pairs before and after binding," in poster proceedings of the 2013 (35th) Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Osaka, Japan, July 3-7, 2013 ([[http://embc2013.embs.org|EMBC 2013]]) | - **__Darby Tien-Hao Chang__**, Chia-Ming Yeh, Ming Liang Wei and Wei-Sheng Wu, "A Metric for Computing Regulatory Similarity of Two Genes," in proceedings of the 11th IEEE International Conference on Control & Automation, Taichung, Taiwan, June 18-20, 2014. ([[http://ieee-icca.org/|ICCA 2014]]) |
| - **__Darby Tien-Hao Chang__**, Yu-Hsiu Hung, Shu-Chun Li, Hsaing-Hung Cheng, Hao Wang, Chia-Wei Chou and Yen-Cheng Tang, "An orange social platform for young people," in proceedings of the 2013 International Conference on Orange Technologies, Tainan, Taiwan, March 12-16, 2013. (ICOT 2013) | - **__Darby Tien-Hao Chang__**, Wen-Hao Chiang and Hao Wang, "An enhanced database of protein structure pairs before and after binding," in proceedings of the Annual Conference on Engineering & Information Technology, Tokyo, Japan, March 28-30, 2014. ([[http://www.aceait.org/|ACEAIT 2014]]) |
| - Guan-Yu Shiu and **__Darby Tien-Hao Chang__**, "Combining Multiple Cis-regulatory Module Predictors to Improve Prediction Accuracy," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - Tzu-Wen Lin and **__Darby Tien-Hao Chang__**, "Combining Phylogenetic Profiling-based and Machine Learning-based Techniques to Predict Functional Related Proteins," in proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) |
| - Hao Wang and **__Darby Tien-Hao Chang__**, "Molecule society: elucidating the complicated relations among biological molecules from literature and structural information," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - Jhih-Jheng Zeng and **__Darby Tien-Hao Chang__**, "A mobile game for biomedical literature mining," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) |
| - Jhih-Jheng Zeng and **__Darby Tien-Hao Chang__**, "Integrating an Android App and social network for mining biomedical literature," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - Shao-Ting Jang and **__Darby Tien-Hao Chang__**, "A systematic analysis on regulatory characteristics of genes with protein-protein interactions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) |
| - Shao-Ting Jang and **__Darby Tien-Hao Chang__**, "A systematic analysis on regulatory characteristics of genes with protein-protein interactions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - **__Darby Tien-Hao Chang__**, Wen-Hao Chiang and Chia-Wei Chou, "Identifying structure variation profiles corresponding to biological processes and functions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Taichung, Taiwan, November 8-9, 2013. ([[http://biodiv.tw/symposium/2013ISEGB/|ISEGB 2013]]) |
| - Tzu-Wen Lin and **__Darby Tien-Hao Chang__**, "Predicting Protein-protein Interactions Based on Frequent Short Sequences in Proteome," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - **__Darby Tien-Hao Chang__**, Wen-Hao Chiang and Hao Wang, "An enhanced repository of protein structure pairs before and after binding," in poster proceedings of the 2013 (35th) Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Osaka, Japan, July 3-7, 2013. ([[http://embc2013.embs.org|EMBC 2013]]) |
| - You-Jie Sun and **__Darby Tien-Hao Chang__**, "Enhancing cis-regulatory model prediction by including interaction information between transcription factors," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012 (ISEGB 2012) | - **__Darby Tien-Hao Chang__**, Yu-Hsiu Hung, Shu-Chun Li, Hsaing-Hung Cheng, Hao Wang, Chia-Wei Chou and Yen-Cheng Tang, "An orange social platform for young people," in proceedings of the 2013 International Conference on Orange Technologies, Tainan, Taiwan, March 12-16, 2013. (ICOT 2013) |
| | - Chen-Yu Fan, Yi-Han Bai, Cheng-Yi Huang, Tsung-Ju Yao and Darby **Tien-Hao Chang**, "PRASA: an integrated web server that analyzes protein interaction types," in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. ([[http://conf.ncku.edu.tw/giw2012/|GIW 2012]]) |
| | - **Darby Tien-Hao Chang**, Wen-Si Li, Yi-Han Bai and Wei-Sheng Wu, "YGA: identifying distinct biological features between yeast gene sets," in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. ([[http://conf.ncku.edu.tw/giw2012/|GIW 2012]]) |
| | - Jung-Hsien Chiang, **Darby Tien-Hao Chang**, Hung-Yu Kao, "Introduction to the 23rd International Conference on Genome Informatics (GIW2012)," in proceedings of the 23th International Conference on Genome Informatics, Tainan, Taiwan, December 12-14, 2012. ([[http://conf.ncku.edu.tw/giw2012/|GIW 2012]]) |
| | - Guan-Yu Shiu and **__Darby Tien-Hao Chang__**, "Combining Multiple Cis-regulatory Module Predictors to Improve Prediction Accuracy," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| | - Hao Wang and **__Darby Tien-Hao Chang__**, "Molecule society: elucidating the complicated relations among biological molecules from literature and structural information," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| | - Jhih-Jheng Zeng and **__Darby Tien-Hao Chang__**, "Integrating an Android App and social network for mining biomedical literature," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| | - Shao-Ting Jang and **__Darby Tien-Hao Chang__**, "A systematic analysis on regulatory characteristics of genes with protein-protein interactions," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| | - Tzu-Wen Lin and **__Darby Tien-Hao Chang__**, "Predicting Protein-protein Interactions Based on Frequent Short Sequences in Proteome," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| | - You-Jie Sun and **__Darby Tien-Hao Chang__**, "Enhancing cis-regulatory model prediction by including interaction information between transcription factors," in poster proceedings of the International Symposium on Evolutionary Genetic and Bioinformatics, Kaohsiung, Taiwan, October 19-21, 2012. (ISEGB 2012) |
| - Chien-Ju Li, Chun-Hui Yu, Chi-Chuan Hwang, Tsunglin Liu and **__Darby Tien-Hao Chang__**, "SIMGraph: Simplifying contig graph to improve //de novo// genome assembly using next-generation sequencing data," in proceedings of the XXXII International Conference on Bioinformatics, Computational and Systems Biology, Tokyo, Japan, May 29-30, 2012. (ICBCSBB 2012) | - Chien-Ju Li, Chun-Hui Yu, Chi-Chuan Hwang, Tsunglin Liu and **__Darby Tien-Hao Chang__**, "SIMGraph: Simplifying contig graph to improve //de novo// genome assembly using next-generation sequencing data," in proceedings of the XXXII International Conference on Bioinformatics, Computational and Systems Biology, Tokyo, Japan, May 29-30, 2012. (ICBCSBB 2012) |
| - **__Darby Tien-Hao Chang__**, Chih-Yun Chiang, Fung-Wei Lin and Chen-Yu Fan, “Studying Disorder-to-Order Transitions from Structural Analysis,” in proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences, Orlando, Florida, February 3-5, 2011 (ICCABS 2011) | - **__Darby Tien-Hao Chang__**, Chih-Yun Chiang, Fung-Wei Lin and Chen-Yu Fan, “Studying Disorder-to-Order Transitions from Structural Analysis,” in proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences, Orlando, Florida, February 3-5, 2011. (ICCABS 2011) |
| - Yi-Zhong Weng, **__Darby Tien-Hao Chang__**, Yu-Feng Huang and Chih-Wei Lin, “A study on the flexibility of enzyme active sites,” in proceedings of the 9th Asia Pacific Bioinformatics Conference, Incheon, Korea, January 11-14, 2011 (APBC 2011) | - Yi-Zhong Weng, **__Darby Tien-Hao Chang__**, Yu-Feng Huang and Chih-Wei Lin, “A study on the flexibility of enzyme active sites,” in proceedings of the 9th Asia Pacific Bioinformatics Conference, Incheon, Korea, January 11-14, 2011. (APBC 2011) |
| - Chen-Hao Hsueh, **__Darby Tien-Hao Chang__** and Chih-Yun Chien, “Predicting DNA-binding Proteins using Disorder Information,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010 (InCoB 2010) | - Chen-Hao Hsueh, **__Darby Tien-Hao Chang__** and Chih-Yun Chien, “Predicting DNA-binding Proteins using Disorder Information,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010) |
| - Ting-Ying Chien, Chien-Yu Chen, Chih-Kang Lin, Chih-Wei Lin, Cheng-Yi Huang and **__Darby Tien-Hao Chang__**, “Prediction of DNA-binding profiles by protein-DNA complexes,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010 (InCoB 2010) | - Ting-Ying Chien, Chien-Yu Chen, Chih-Kang Lin, Chih-Wei Lin, Cheng-Yi Huang and **__Darby Tien-Hao Chang__**, “Prediction of DNA-binding profiles by protein-DNA complexes,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010) |
| - Jian-Wei Wu, **__Darby Tien-Hao Chang__** and Chien-Ju Li, “Predicting Protein-protein Interactions using a Hybrid Approach,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010 (InCoB 2010) | - Jian-Wei Wu, **__Darby Tien-Hao Chang__** and Chien-Ju Li, “Predicting Protein-protein Interactions using a Hybrid Approach,” in poster proceedings of the 9th International Conference of Bioinformatics, Tokyo, Japan, Sepetmber 26-28, 2010. (InCoB 2010) |
| - Chih-Hung Hsieh, **__Darby Tien-Hao Chang__**, Cheng-Hao, Hsueh, Chi-Yeh Wu and Yen-Jen Oyang, “Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010 (APBC 2010) | - Chih-Hung Hsieh, **__Darby Tien-Hao Chang__**, Cheng-Hao, Hsueh, Chi-Yeh Wu and Yen-Jen Oyang, “Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010. (APBC 2010) |
| - **__Darby Tien-Hao Chang__**, Yu-Tang Syu and Po-Chang Lin, “Predicting the protein-protein interactions using primary structures with predicted protein surface,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010 (APBC 2010) | - **__Darby Tien-Hao Chang__**, Yu-Tang Syu and Po-Chang Lin, “Predicting the protein-protein interactions using primary structures with predicted protein surface,” in proceedings of the 8th Asia Pacific Bioinformatics Conference, Bangalore, India, January 18-21, 2010. (APBC 2010) |
| - **__Darby Tien-Hao Chang__**, Jung-Hsin Lin, Chih-Hung Hsieh and Yen-Jen Oyang, “On the Design of Optimization Algorithms for Prediction of Molecular Interactions,” in proceedings of the 9th International Conference on Bioinformatics and BioEngineering, Taichung, Taiwan, June 22-24, 2009. (BIBE 2009) | - **__Darby Tien-Hao Chang__**, Jung-Hsin Lin, Chih-Hung Hsieh and Yen-Jen Oyang, “On the Design of Optimization Algorithms for Prediction of Molecular Interactions,” in proceedings of the 9th International Conference on Bioinformatics and BioEngineering, Taichung, Taiwan, June 22-24, 2009. (BIBE 2009) |
| - Chih-Hung Hsieh, **__Darby Tien-Hao Chang__** and Yen-Jen Oyang, “Data Classification with a Generalized Gaussian Components based Density Estimation Algorithm,” in poster Proceedings of the 2009 International Joint Conference on Neural Networks, Atlanta, Georgia, June 14-19, 2009. (IJCNN 2009) | - Chih-Hung Hsieh, **__Darby Tien-Hao Chang__** and Yen-Jen Oyang, “Data Classification with a Generalized Gaussian Components based Density Estimation Algorithm,” in poster Proceedings of the 2009 International Joint Conference on Neural Networks, Atlanta, Georgia, June 14-19, 2009. (IJCNN 2009) |
